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RNA-seq analysis with Bioconductor
RNA-seq analysis with Bioconductor
Key Points
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RNA-seq analysis with Bioconductor
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EPISODES
Summary and Setup
1. Introduction to RNA-seq
2. Downloading and organizing files
3. Mapping reads to a reference genome
4. Quantifying Gene Expression
5. RStudio Project and Experimental Data
6. Importing and annotating quantified data into R
7. Exploratory analysis and quality control
8. Differential expression analysis
9. Extra exploration of design matrices
10. Gene set enrichment analysis
11. Next steps
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