GO enrichment analysis for Maize genes
guide to run GO enrichment analysis for Maize (B73.v5) genes
All Posts
2023
Running Rstudio on cluster
guide to setup and run Rstudio (from container) on a cluster
2020
I have a new website!
My new webiste using GitHub pages is now live!
2018
Shortcuts for SSH hosts
adding the config file to make SSH connection easier
2017
Enabling variable expansion on Linux HPC
enabling auto-completion in Bash
How to prevent SSH from disconnecting if its been idle for a while
a trick in SSH to send signal a regular interval to keep your session alive
How to move all CPAN installations from one perl version to another
Moving your perl packages around
How to insert word like comments in Overleaf Latex documents
LaTex trick for collaborative writing!
2015
Summary statistics for a fasta file
Get detailed summary for your fasta file
2014
Calculating moving average in R
attach moving average field for your file
Making an never ending history file
Problem: your history file in bash is not big enough to hold every single command you type
Highlight words enclosed within parenthesis in MS Word
A regex like trick in MS Word to speed up your work!
Calculate length of all sequences in an multi fasta file
A simple solution to get fasta length using python
PBS How to submit jobs that depend on previously submitted jobs
Submitting dependency jobs in PBS-Torque job scheduler
Calculating genome size from flow cytometry results
Flow cytomerty results in picogram, but you need it in Mb?
Simple script to count the number of reads in FASTQ file
count number of reads in your fastq file, simple solution using only bash!
Running interactive jobs on clusters
quick introduction for using screen, a program that keeps your terminal alive even after you disconnect/close your terminal
Extract sequences from a FASTA file given the co ordinates
having a sequence co-ordinates and you need the sequence? use this trick!
How to install a RPM package
simple trick to open a RPM package and install the programs if you can't find the source
Convert FASTQ to FASTA
Many different ways for a simple conversion of fastq format to fasta format
2013
Split multi fasta sequence file
If you need to break a large fasta file with multiple sequences into individual file, use this trick!
Bash loops for productivity
some commonly use bash loops that can boost your productivity!
Mapping network drives in Windows
hack for mapping multiple network drives on the same machine
This is my first blog!
stating blog post, what should I write about?